Peculiarities of community acquired pneumonia triggered by novel coronavirus SARS-CoV-2 (review)
https://doi.org/10.36604/1998-5029-2020-78-135-146
Abstract
Results. The pathogenesis of COVID-19 is based on injury of alveolocytes and other organs (kidneys, heart and other) that have angiotensin II receptors on the cell membrane. “Cytokine storm”, disseminated intravascular coagulation syndrome that are at the basis of acute respiratory distress syndrome pathogenesis with a high probability of death are common in patients with COVID-19. Apart of homeostasis dysregulation, emerging coinfection of bacterial, viral and fungal etiology notably deteriorates the disease. Biological material is a key aspect in accurate laboratory diagnosis of pneumonia caused by SARS-CoV-2. Thus, biological material of choice are sputum or preferably bronchoalveolar lavage that give less falsenegative results. Only in case of their absence evaluation of nasopharyngeal swabs via PCR are justified. Apart of laboratory diagnosis of the novel coronavirus disease, computer tomography of lungs is also effective. Computer tomography can be even more sensitive than PCR of nasopharyngeal swabs in early stages of the disease. The most frequent radiographic symptoms are bilateral, basal-predominant, peripheral, round ground glass opacities, halo sign.
Conclusion. Thereby in order to execute most effective diagnosis of pneumonia, caused by SARS-CoV-2 it is necessary to utilize epidemiological anamnesis alongside with laboratory diagnosis and radiological imaging.
About the Authors
E. A. BazykinaRussian Federation
Elena A. Bazykina, Junior Staff Scientist, Laboratory of Epidemiology and Prevention of Viral Hepatitis and AIDS
2 Shevchenko Str., Khabarovsk, 680610
O. E. Trotsenko
Russian Federation
Olga E. Trotsenko, MD, PhD, D.Sc. (Med.), Director
2 Shevchenko Str., Khabarovsk, 680610
References
1. Briko N.I. 100 Years after the Spanish Flu Pandemic. The Evolution of the Influenza Virus and the Development of the Flu Vaccine. Epidemiology and Vaccinal Prevention 2018; 17(4):68‒75 (in Russian).
2. Jiang F., Deng L., Zhang L., Cai Y., Cheung C.W., Xia Z. Review of the Clinical Characteristics of Coronavirus Disease 2019 (COVID-19). J. Gen. Intern. Med. 2020; 35(5):1545–1549. https://doi.org/10.1007/s11606-020-05762-w
3. Zhu N., Zhang D., Wang W., Li X., Yang B., Song J., Zhao X., Huang B., Shi W., Lu R., Niu P., Zhan F., Ma X., Wang D., Xu W., Wu G., Gao G.F., Tan W.; China Novel Coronavirus Investigating and Research Team. A Novel Coronavirus from Patients with Pneumonia in China, 2019. N. Engl. J. Med. 2020; 382(8):727‒733. doi: 10.1056/NEJMoa2001017
4. de Wit E., van Doremalen N., Falzarano D., Munster V.J. SARS and MERS: recent insights into emerging coronaviruses. Nat. Rev. Microbiol. 2016; 14(8):523‒534. doi:10.1038/nrmicro.2016.81
5. Wang Y., Wang Y., Chen Y., Qin Q. Unique epidemiological and clinical features of the emerging 2019 novel coronavirus pneumonia (COVID-19) implicate special control measures. J. Med. Virol. 2020; 92(6):568‒576. doi: 10.1002/jmv.25748
6. Park J.E., Soyoung J., Aeran K., Park J.E. MERS transmission and risk factors: a systematic review. BMC Public Health 2018; 18:574. doi: 10.1186/s12889-018-5484-8
7. Huang C., Wang Y., Li X., Ren L., Zhao J., Hu Y., Zhang L., Fan G., Xu J., Gu X., Cheng Z., Yu T., Xia J., Wei Y., Wu W., Xie X., Yin W., Li H., Liu M., Xiao Y., Gao H., Guo L., Xie J., Wang G., Jiang R., Gao Z., Jin Q., Wang J., Cao B. Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China. Lancet 2020; 395(10223):497‒506. doi: 10.1016/S0140-6736(20)30183-5
8. Wang D, Hu B, Hu C., Zhu F., Liu X., Zhang J., Wang B, Xiang H., Cheng Z., Xiong Y., Zhao Y., Li Y., Wang X., Peng Z. Clinical Characteristics of 138 Hospitalized Patients With 2019 Novel Coronavirus-Infected Pneumonia in Wuhan, China. JAMA 2020; 323(11):1061‒1069. doi: 10.1001/jama.2020.1585
9. Varatharaj A., Thomas N., Ellul M.A., Davies N.W.S., Pollak T.A., Tenorio E.L., Sultan M., Easton A., Breen G., Zandi M., Coles J.P., Manji H., Al-Shahi Salman R., Menon D.K., Nicholson T.R., Benjamin L.A., Carson A., Smith C., Turner M.R., Solomon T., Kneen R., Pett S.L., Galea I., Thomas R.H., Michael B.D.; CoroNerve Study Group. Neurological and neuropsychiatric complications of COVID-19 in 153 patients: a UK-wide surveillance study. Lancet Psychiatry 2020; 7(10):875‒882. doi: 10.1016/S2215-0366(20)30287-X
10. Jin Y.H., Cai L., Cheng Z.S., Cheng H., Deng T., Fan Y.P., Fang C., Huang D., Huang L.Q., Huang Q., Han Y., Hu B., Hu F., Li B.H,. Li Y.R., Liang K., Lin L.K., Luo L.S., Ma J., Ma L.L., Peng Z.Y., Pan Y.B., Pan Z.Y., Ren X.Q., Sun H.M., Wang Y., Wang Y.Y., Weng H., Wei C.J., Wu D.F., Xia J., Xiong Y., Xu H.B., Yao X.M., Yuan Y.F., Ye T.S., Zhang X.C., Zhang Y.W., Zhang Y.G., Zhang H.M., Zhao Y., Zhao M.J., Zi H., Zeng X.T., Wang Y.Y., Wang X.H. A rapid advice guideline for the diagnosis and treatment of 2019 novel coronavirus (2019-nCoV) infected pneumonia (standard version). Mil. Med. Res. 2020; 7(1):4. doi: 10.1186/s40779-020-0233-6
11. Transmission of SARS-CoV-2: implications for infection prevention precautions. WHO Scientific Brief (9 July 2020). Available at: https://www.who.int/news-room/commentaries/detail/transmission-of-sars-cov-2-implications-for-infection-prevention-precautions
12. Wu Y., Guo C., Tang L., Hong Z., Zhou J., Dong X., Yin H., Xiao Q., Tang Y., Qu X., Kuang L., Fang X., Mishra N., Lu J., Shan H., Jiang G., Huang X. Prolonged presence of SARS-CoV-2 viral RNA in faecal samples. Lancet Gastroenterol. Hepatol. 2020; 5(5):434‒435. doi: 10.1016/S2468-1253(20)30083-2
13. Sun J., Zhu A., Li H., Zheng K., Zhuang Z., Chen Z., Shi Y., Zhang Z., Chen S.B., Liu X., Dai J., Li X., Huang S., Huang X., Luo L., Wen L., Zhuo J., Li Y., Wang Y., Zhang L., Zhang Y., Li F., Feng L., Chen X., Zhong N., Yang Z., Huang J., Zhao J., Li Y.M. Isolation of infectious SARS-CoV-2 from urine of a COVID-19 patient. Emerg. Microbes Infect. 2020; 9(1):991‒993. doi: 10.1080/22221751.2020.1760144
14. Wang W., Xu Y., Gao R., Lu R., Han K., Wu G., Tan W. Detection of SARS-CoV-2 in Different Types of Clinical Specimens. JAMA 2020; 323(18):1843‒1844. doi: 10.1001/jama.2020.3786
15. García L.F. Immune Response, Inflammation, and the Clinical Spectrum of COVID-19. Front. Immunol. 2020; 11:1441. doi: 10.3389/fimmu.2020.01441
16. Wu J.H., Li X., Huang B., Su H., Li Y., Luo D.J., Chen S., Ma L., Wang S.H., Nie X., Peng L. Pathological changes of fatal coronavirus disease 2019 (COVID-19) in the lungs: report of 10 cases by postmortem needle autopsy. Zhonghua Bing Li Xue Za Zhi 2020; 49(6):568‒575 (in Chinese). doi: 10.3760/cma.j.cn112151-20200405-00291
17. Zhou P., Yang X.L., Wang X.G., Hu B., Zhang L., Zhang W., Si H.R., Zhu Y., Li B., Huang C.L,. Chen H.D., Chen J,. Luo Y., Guo H., Jiang R.D., Liu M.Q., Chen Y., Shen X.R., Wang X., Zheng X.S., Zhao K., Chen Q.J., Deng F., Liu L.L., Yan B., Zhan F.X., Wang Y.Y., Xiao G.F., Shi Z.L. A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature 2020; 579(7798):270‒273. doi: 10.1038/s41586-020-2012-7
18. Harmer D., Gilbert M., Borman R., Clark K. L. Quantitative mRNA expression profiling of ACE 2, a novel homologue of angiotensin converting enzyme. FEBS Lett. 2002; 532(1-2):107‒110. doi: 10.1016/s0014-5793(02)03640-2
19. Lin L., Lu L., Cao W., Li T. Hypothesis for potential pathogenesis of SARS-CoV-2 infection-a review of immune changes in patients with viral pneumonia. Emerg. Microbes Infect. 2020; 9(1):727‒732. doi: 10.1080/22221751.2020.1746199
20. Hu Y., Deng H., Huang L., Xia L., Zhou X. Analysis of Characteristics in Death Patients with COVID-19 Pneumonia without Underlying Diseases. Acad. Radiol. 2020; 27(5):752. doi: 10.1016/j.acra.2020.03.023
21. Li L., Zhang B., He B., Gong Z., Chen X. Critical patients with coronavirus disease 2019: Risk factors and outcome nomogram. J. Infect. 2020; 80(6):e37‒e38. doi: 10.1016/j.jinf.2020.03.025
22. Wang F., Nie J., Wang H., Zhao Q., Xiong Y., Deng L., Song S., Ma Z., Mo P., Zhang Y. Characteristics of Peripheral Lymphocyte Subset Alteration in COVID-19 Pneumonia. J. Infect. Dis. 2020; 221(11):1762‒1769. doi: 10.1093/infdis/jiaa150
23. Liu Y., Yang Y., Zhang C., Huang F., Wang F., Yuan J., Wang Z., Li J., Li J., Feng C., Zhang Z., Wang L., Peng L., Chen L., Qin Y., Zhao D., Tan S., Yin L., Xu J., Zhou C., Jiang C., Liu L. Clinical and biochemical indexes from 2019-nCoV infected patients linked to viral loads and lung injury. Sci. China Life Sci. 2020; 63(3):364‒374. doi: 10.1007/s11427-020-1643-8
24. Liu X., Zhou H., Zhou Y., Wu X., Zhao Y., Lu Y., Tan W., Yuan M., Ding X., Zou J., Li R., Liu H., Ewing R.M., Hu Y., Nie H., Wang Y. Risk factors associated with disease severity and length of hospital stay in COVID-19 patients. J. Infect. 2020; 81(1).e95‒e97. doi: 10.1016/j.jinf.2020.04.008
25. Li L., Zhang B., He B., Gong Z., Chen X. Critical patients with coronavirus disease 2019: Risk factors and outcome nomogram. J. Infect. 2020; 80(6):e37‒e38. doi: 10.1016/j.jinf.2020.03.025
26. Porfidia A., Pola R. Venous thromboembolism in COVID-19 patients. J. Thromb. Haemost. 2020; 18(6):1516‒1517. doi: 10.1111/jth.14842
27. Guevara-Noriega K.A., Lucar-Lopez G.A., Nuñez G., Rivera-Aguasvivas L., Chauhan I. Coagulation Panel in Patients with SARS-CoV2 Infection (COVID-19). Ann. Clin. Lab. Sci. 2020; 50(3):295‒298.
28. Du R.H., Liang L.R., Yang C.Q., Wang W., Cao T.Z., Li M., Guo G.Y., Du J., Zheng C.L., Zhu Q,. Hu M., Li X.Y., Peng P., Shi H.Z. Predictors of mortality for patients with COVID-19 pneumonia caused by SARS-CoV-2: a prospective cohort study. Eur. Respir. J. 2020; 55(5):2000524. doi: 10.1183/13993003.00524-2020
29. Ackermann M., Verleden S.E., Kuehnel M., Haverich A., Welte T., Laenger F., Vanstapel A., Werlein C., Stark H., Tzankov A., Li W.W., Li V.W., Mentzer S.J., Jonigk D. Pulmonary Vascular Endothelialitis, Thrombosis, and Angiogenesis in Covid-19. N. Engl. J. Med. 2020; 383(2):120‒128. doi: 10.1056/NEJMoa2015432
30. Yang X., Yu Y., Xu J., Shu H., Xia J., Liu H., Wu Y., Zhang L., Yu Z., Fang M., Yu T., Wang Y., Pan S., Zou X., Yuan S., Shang Y. Clinical course and outcomes of critically ill patients with SARS-CoV-2 pneumonia in Wuhan, China: a single-centered, retrospective, observational study. Lancet Respir. Med. 2020; 8(5):475‒481. doi: 10.1016/S2213-2600(20)30079-5
31. Lansbury L., Lim B., Baskaran V., Lim W.S. Co-infections in people with COVID-19: a systematic review and meta-analysis. J. Infect. 2020; 81(2):266‒275. doi: 10.1016/j.jinf.2020.05.046
32. Póvoa HC.C., Chianca G.C., Iorio N.L.P.P. COVID-19: An Alert to Ventilator-Associated Bacterial. Infect. Dis. Ther. 2020; 9(3):417‒420. doi: 10.1007/s40121-020-00306-5
33. Orlova O.A., Akimkin V.G. Organization of epidemiological diagnosis of ventilator-associated respiratory infections. Medical alphabet 2017; 3(30):15‒19 (in Russian).
34. Teng F., Liu X., Guo S.B., Li Z., Ji W.Q., Zhang F., Zhu X.M. Community-acquired bacterial co-infection predicts severity and mortality in influenza-associated pneumonia admitted patients. J. Infect. Chemother. 2019; 25(2):129‒136. doi: 10.1016/j.jiac.2018.10.014
35. Nowak M.D., Sordillo E.M., Gitman M.R., Paniz Mondolfi A.E. Co-infection in SARS-CoV-2 infected Patients: Where Are Influenza Virus and Rhinovirus/Enterovirus? J. Med. Virol. 2020. https://doi.org/10.1002/jmv.25953
36. Kreitmann L., Monard C., Dauwalder O., Simon M., Argaud L. Early bacterial co-infection in ARDS related to COVID-19. Intensive Care Med. 2020; 46(9):1787‒1789. doi: 10.1007/s00134-020-06165-5
37. Cucchiari D., Pericàs J.M., Riera J., Gumucio R., Coloma E., Nicolás D. Pneumococcal superinfection in COVID19 patients: A series of 5 cases. Med. Clin. (Barc). 2020. doi: 10.1016/j.medcli.2020.05.022
38. He G., Wu J., Shi J., Dai J., Gamber M., Jiang X., Sun W., Cai J. COVID-19 in tuberculosis patients: A report of three cases. J. Med. Virol. 2020. 10.1002/jmv.25943. doi: 10.1002/jmv.25943
39. Chaudhary W.A., Chong P.L., Mani B.I., Asli R., Momin R.N., Abdullah M.S., Chong V.H. Primary Respiratory Bacterial Coinfections in Patients with COVID-19. Am. J. Trop. Med. Hyg. 2020; 103(2):917‒919. doi: 10.4269/ajtmh.20-0498
40. Zhou Y., Guo S., He Y., Zuo Q., Liu D., Xiao M., Fan J., Li X. COVID-19 Is Distinct From SARS-CoV-2-Negative Community-Acquired Pneumonia. Front. Cell. Infect. Microbiol. 2020; 10:322. doi: 10.3389/fcimb.2020.00322
41. Xia T., Li J., Gao J., Xu X. Small Solitary Ground-Glass Nodule on CT as an Initial Manifestation of Coronavirus Disease 2019 (COVID-19) Pneumonia. Korean J. Radiol. 2020; 21(5):545‒549. doi: 10.3348/kjr.2020.0240
42. Song F., Shi N., Shan F., Zhang Z., Shen J., Lu H., Ling Y., Jiang Y., Shi Y. Emerging 2019 Novel Coronavirus (2019-nCoV) Pneumonia. Radiology 2020; 295(1):210‒217. doi: 10.1148/radiol.2020200274
43. Shi H., Han X., Jiang N., Cao Y., Alwalid O., Gu J., Fan Y., Zheng C. Radiological findings from 81 patients with COVID-19 pneumonia in Wuhan, China: a descriptive study. Lancet Infect. Dis. 2020; 20(4):425‒434. doi: 10.1016/S1473-3099(20)30086-4
44. Pan Y., Guan H., Zhou S., Wang Y., Li Q., Zhu T., Hu Q., Xia L. Initial CT findings and temporal changes in patients with the novel coronavirus pneumonia (2019-nCoV): a study of 63 patients in Wuhan, China. Eur. Radiol. 2020; 30(6):3306‒3309. doi: 10.1007/s00330-020-06731-x
45. Bhat R., Hamid A., Kunin J.R., Saboo S.S., Batra K., Baruah D., Bhat A.P. Chest Imaging in Patients Hospitalized With COVID-19 Infection ‒ A Case Series. Curr. Probl. Diagn. Radiol. 2020; 49(4):294‒301. doi: 10.1067/j.cpradiol.2020.04.001
46. Sun R., Liu H., Wang X. Mediastinal Emphysema, Giant Bulla, and Pneumothorax Developed during the Course of COVID-19 Pneumonia. Korean J. Radiol. 2020; 21(5):541‒544. doi: 10.3348/kjr.2020.0180
47. Wang J., Su X., Zhang T., Zheng C. Spontaneous Pneumomediastinum: A Probable Unusual Complication of Coronavirus Disease 2019 (COVID-19) Pneumonia. Korean J. Radiol. 2020; 21(5):627‒628. doi: 10.3348/kjr.2020.0281
48. Tian X.L., Peng M., Wang H.P., Cai B.Q., Xu W.B., Zhu Y.J., Li T.S., Zhu H.D., Song L., Wang M.Z., Zhang L., Shi J.H. The differential diagnosis for novel coronavirus pneumonia and similar lung diseases in general hospitals. Zhonghua Jie He He Hu Xi Za Zhi 2020; 43(5):401‒408 (in Chinese). doi: 10.3760/cma.j.cn112147-20200221-00136
49. Lin C., Ding Y., Xie B., Sun Z., Li X., Chen Z., Niu M. Asymptomatic novel coronavirus pneumonia patient outside Wuhan: The value of CT images in the course of the disease. Clin. Imaging 2020; 63:7‒9. doi: 10.1016/j.clinimag.2020.02.008
50. Hase R., Kurita T., Muranaka E., Sasazawa H., Mito H., Yano Y. A case of imported COVID-19 diagnosed by PCR-positive lower respiratory specimen but with PCR-negative throat swabs. Infect. Dis. (Lond) 2020; 52(6):423‒426. doi: 10.1080/23744235.2020.1744711
51. Hornuss D., Laubner K., Monasterio C., Thimme R., Wagner D. COVID-19 associated pneumonia despite repeatedly negative PCR-analysis from oropharyngeal swabs. Dtsch Med. Wochenschr. 2020; 145(12):844‒849 (in German). doi: 10.1055/a-1170-6061
52. Lin C., Xiang J., Yan M., Li H., Huang S., Shen C. Comparison of throat swabs and sputum specimens for viral nucleic acid detection in 52 cases of novel coronavirus (SARS-Cov-2)-infected pneumonia (COVID-19). Clin. Chem. Lab. Med. 2020; 58(7):1089‒1094. doi: 10.1515/cclm-2020-0187
53. Sivakorn C., Luvira V., Muangnoicharoen S., Piroonamornpun P., Ouppapong T., Mungaomklang A., Iamsirithaworn S. Case Report: Walking Pneumonia in Novel Coronavirus Disease (COVID-19): Mild Symptoms with Marked Abnormalities on Chest Imaging. Am. J. Trop. Med. Hyg. 2020; 102(5):940‒942. doi: 10.4269/ajtmh.20-0203
54. Long C., Xu H., Shen Q., Zhang X., Fan B., Wang C., Zeng B., Li Z., Li X., Li H. Diagnosis of the Coronavirus disease (COVID-19): rRT-PCR or CT? Eur. J. Radiol. 2020; 126:108961. doi: 10.1016/j.ejrad.2020.108961
55. Fang Y., Zhang H., Xie J., Lin M., Ying L., Pang P., Ji W. Sensitivity of Chest CT for COVID-19: Comparison to RT-PCR. Radiology 2020; 296(2):E115‒E117. doi: 10.1148/radiol.2020200432
56. Fechner C., Strobel K., Treumann T., Sonderegger B., Azzola A., Fornaro J., Schrading S., Roos J.E. COVID-19 and the role of imaging: early experiences in Central Switzerland. Swiss Med. Wkly 2020; 150:w20304. doi: 10.4414/smw.2020.20304
57. Zheng Z., Yao Z., Wu K., Zheng J. The diagnosis of pandemic coronavirus pneumonia: A review of radiology examination and laboratory test. J. Clin. Virol. 2020; 128:104396 doi: 10.1016/j.jcv.2020.104396
58. Tenda E.D., Yulianti M., Asaf M.M., Yunus R.E., Septiyanti W., Wulani V., Pitoyo C.W., Rumende C.M., Setiati S. The Importance of Chest CT Scan in COVID-19. Acta Med. Indones. 2020; 52(1):68‒73.
59. Ai T., Yang Z., Hou H., Zhan C., Chen C., Lv W., Tao Q., Sun Z., Xia L. Correlation of Chest CT and RT-PCR Testing for Coronavirus Disease 2019 (COVID-19) in China: A Report of 1014 Cases. Radiology 2020; 296(2):E32‒E40. doi: 10.1148/radiol.2020200642
60. Kang Z., Li X., Zhou S. Recommendation of low-dose CT in the detection and management of COVID-2019. Eur. Radiol. 2020; 30(8):4356‒4357. doi: 10.1007/s00330-020-06809-6
61. Kim H. Outbreak of novel coronavirus (COVID-19): What is the role of radiologists? Eur. Radiol. 2020; 30(6):3266‒3267. doi: 10.1007/s00330-020-06748-2
Review
For citations:
Bazykina E.A., Trotsenko O.E. Peculiarities of community acquired pneumonia triggered by novel coronavirus SARS-CoV-2 (review). Bulletin Physiology and Pathology of Respiration. 2020;(78):135-146. (In Russ.) https://doi.org/10.36604/1998-5029-2020-78-135-146